To provide a method of manufacturing a waterproof shoe, which enables relatively easy performance of manufacture of the waterproof shoe having an upper provided with a three-layer structure comprising a front fabric part, a back fabric part and a sock-like waterproof part interposed between them.

Front and back fabric parts 5 and 6 of an upper are joined together by sewing only their top parts and bringing other parts into a separated state. After the back fabric part 6 of the upper and an insole 2 are housed in a waterproof part 7 formed like a sock, the front fabric part 5 of the upper is reversed to cover the waterproof part 7. Thus, the upper has a three-layer structure.